Publications

Published Papers

  1. dame-flame: a Python package providing fast interpretable matching for causal inference
    Gupta, N.R., Orlandi, V., Chang, C.-R., Wang, T., Morucci, M., Dey, P., Howell, T.J., Sun, X., Ghosal, A., Roy, S., Rudin, C., Volfovsky, A.
    Journal of Statistical Software, 2025. DOI

  2. Outlier detection for multi-network data
    Dey, P., Zhang, Z., Dunson, D.B.
    Bioinformatics, 2022. DOI

Preprints and Papers Under Review

  1. A Generalized Tangent Approximation Framework for Strongly Super-Gaussian Likelihoods
    Roy, S., Dey, P., Pati, D., Mallick, B.K.
    arXiv preprint. Major revision, JASA Theory and Methods. arXiv

  2. JASPER: Joint Bayesian Analysis of Spatial Expression via Regression
    Dey, P., Guhaniyogi, R., Ni, Y., Mallick, B.K.
    arXiv preprint. Submitted. arXiv

  3. Additive Nonparametric Regression with Spatial and Network Objects
    Guhaniyogi, R., Dey, P., Chandra, K., Scheffler, A., Mallick, B.K.
    Major revision, Biometrics.

  4. VaSST: Variational Inference for Symbolic Regression using Soft Symbolic Trees
    Roy, S., Dey, P., Mallick, B.K.
    arXiv preprint. Submitted. arXiv

  5. Hierarchical Bayesian Operator-induced Symbolic Regression Trees for Structural Learning of Scientific Expressions
    Roy, S., Dey, P., Pati, D., Mallick, B.K.
    arXiv preprint. Submitted. arXiv

  6. Ensembles of Mondrian Processes for Continuous Modeling of Structural Connectomes
    Dey, P., Zhang, Z., Dunson, D.B.
    Submitted.

Manuscripts in Preparation

  1. Joint Integrative Spatial Transcriptomics via Bayesian Modeling for Domain Recovery and Spatially Variable Gene Selection
    Dey, P., Guhaniyogi, R., Ni, Y., Mallick, B.K.
    In preparation.

  2. Hierarchical Ensembles of Mondrian Processes for Simultaneous Modeling of Common and Individual Structure of Connectome Data
    Dey, P., Zhang, Z., Dunson, D.B.
    In preparation.

  3. Noninvasive fecal multi-omic signatures for ApcS580/+/KrasG12D/+ mice
    Ivanov, I., Mullens, D., Dey, P., Chung, H.C., Gaynanova, I., Ni, Y., Ufondu, A., Yang, F., Han, H., Woods, P., Goldsby, J.S., Davidson, L.A., Safe, S.H., Jayaraman, A., Chapkin, R.S.
    In preparation.

  4. Diet shapes gut microbial function and indirectly influences host gene expression in infants
    Dey, P., Mullens, D., Ivanov, I., Chapkin, R., Donovan, S., et al.
    In preparation.